PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g036070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 725aa    MW: 79162.3 Da    PI: 6.4395
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g036070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-193388156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR++ k
  Csa16g036070.1 33 KKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88
                    688999**********************************************9877 PP

2START149.82.4e-472364562206
                     HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 
                     +a++a++el+++   +ep+W+k     +++n   +  +f++s +      + +ea+r sg+v+m+++ lv  ++d  +    +   +a+ +tl+v
  Csa16g036070.1 236 IALTAMEELLRLLHTNEPLWTKTDgsrDILNLGSYENIFPRSSNrgknhnFLVEASRSSGIVFMNAMALVDMFMDCVKcaeLFPSIIAASKTLAV 330
                     6899******************99999*************999999****************************99988889999999******* PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     issg      gal+l + e+ +lsplv+ R+   +Ry++q ++g+w++v vS d +q+++ +s++ R   +pSg+li++++ng+skvtwveh++ 
  Csa16g036070.1 331 ISSGmggtheGALHLLYEEMEVLSPLVAtREICELRYCQQIEQGSWIVVNVSYDLPQFVS-HSQSFR---FPSGCLIQDMPNGYSKVTWVEHIET 421
                     ************************************************************.9****9...************************* PP

                     -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +++ p h+l+r +++ g+a+ga +w+ tlqr ce+
  Csa16g036070.1 422 EEKEPiHELYREMIHDGIAFGAERWLTTLQRMCER 456
                     *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-201590IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-222084IPR009057Homeodomain-like
PROSITE profilePS5007118.1553090IPR001356Homeobox domain
SMARTSM003891.6E-183194IPR001356Homeobox domain
CDDcd000863.25E-193391No hitNo description
PfamPF000463.1E-173388IPR001356Homeobox domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
PROSITE profilePS5084845.603226459IPR002913START domain
SuperFamilySSF559612.88E-30227458No hitNo description
CDDcd088752.72E-99230455No hitNo description
SMARTSM002341.6E-37235456IPR002913START domain
PfamPF018527.3E-40236456IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-6288424IPR023393START-like domain
SuperFamilySSF559612.86E-19477712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MSFVVGVGGS GSGSGGDVGG SQHHDGSESD RKKKRYHRHT AQQIQRLESS FKECPHPDEK  60
QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK AENDKIRCEN IAIREALKHA  120
ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP  180
LDLSMTSLTG CGPCGHGPSL DFDLLPGSSM SVGHNNLQSQ PNLAISEMDK PLMTDIALTA  240
MEELLRLLHT NEPLWTKTDG SRDILNLGSY ENIFPRSSNR GKNHNFLVEA SRSSGIVFMN  300
AMALVDMFMD CVKCAELFPS IIAASKTLAV ISSGMGGTHE GALHLLYEEM EVLSPLVATR  360
EICELRYCQQ IEQGSWIVVN VSYDLPQFVS HSQSFRFPSG CLIQDMPNGY SKVTWVEHIE  420
TEEKEPIHEL YREMIHDGIA FGAERWLTTL QRMCERFASL SVPASSSRDL GGVIPSPEGK  480
RSMMRLAQRM ISNYCLSVSR SKNIRSTVVS ELNEVGVRVT EHKSPEPNGT VLCAATTFWL  540
PNSPQNVFNF LKDERTRPQW DVLSNGNSVQ EVAHISNGSH PGNCISVLRA SNASQSNNML  600
ILQESSTDSS GALVVYSPVD LAALNIAMSG EDPSYIPLLS SGFAISPDGN GSTSEQGGGA  660
STSSGRSSSN SSGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ IKTALSGPTA  720
STPA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0039790.0BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds.
GenBankBT0049150.0BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471396.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLR0I7H50.0R0I7H5_9BRAS; Uncharacterized protein
STRINGAT1G73360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11